Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)webseq_0.1.zip(r-4.3)
webseq_0.1.tgz(r-4.4-any)webseq_0.1.tgz(r-4.3-any)
webseq_0.1.tar.gz(r-4.5-noble)webseq_0.1.tar.gz(r-4.4-noble)
webseq_0.1.tgz(r-4.4-emscripten)webseq_0.1.tgz(r-4.3-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://community.r-multiverse.org', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

3.48 score 3 stars 1 scripts 14 exports 33 dependencies

Last updated 1 years agofrom:b710f93da5 (on v0.1.0). Checks:1 OK, 6 WARNING. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKJan 12 2025
R-4.5-winWARNINGJan 12 2025
R-4.5-linuxWARNINGJan 12 2025
R-4.4-winWARNINGJan 12 2025
R-4.4-macWARNINGJan 12 2025
R-4.3-winWARNINGJan 12 2025
R-4.3-macWARNINGJan 12 2025

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Jan 12 2025.

Last update: 2023-12-10
Started: 2023-08-23