Package: webseq 0.1

Tamas Stirling

webseq: Access data from biological sequence databases like NCBI, ENA, MGnify

This package interacts with online biological sequence databases. It provides functions to search for sequences, convert identifiers and download sequences and associated metadata.

Authors:Tamas Stirling

webseq_0.1.tar.gz
webseq_0.1.zip(r-4.5)webseq_0.1.zip(r-4.4)webseq_0.1.zip(r-4.3)
webseq_0.1.tgz(r-4.5-any)webseq_0.1.tgz(r-4.4-any)webseq_0.1.tgz(r-4.3-any)
webseq_0.1.tar.gz(r-4.5-noble)webseq_0.1.tar.gz(r-4.4-noble)
webseq_0.1.tgz(r-4.4-emscripten)webseq_0.1.tgz(r-4.3-emscripten)
webseq.pdf |webseq.html✨
webseq/json (API)

# Install 'webseq' in R:
install.packages('webseq', repos = c('https://r-multiverse.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/stitam/webseq/issues

Datasets:

On CRAN:

3.18 score 3 stars 1 scripts 14 exports 33 dependencies

Last updated 1 years agofrom:b710f93da5 (on v0.1.0). Checks:1 OK, 7 WARNING. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 11 2025
R-4.5-winWARNINGFeb 11 2025
R-4.5-macWARNINGFeb 11 2025
R-4.5-linuxWARNINGFeb 11 2025
R-4.4-winWARNINGFeb 11 2025
R-4.4-macWARNINGFeb 11 2025
R-4.3-winWARNINGFeb 11 2025
R-4.3-macWARNINGFeb 11 2025

Exports:ena_queryextract_accnflag_filesmgnify_endpointsmgnify_instancemgnify_listncbi_download_genomencbi_get_metancbi_link_uidncbi_parsencbi_parse_assembly_xmlncbi_parse_biosample_txtparse_gb_headerparse_report

Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigplyrpurrrR6Rcpprentrezrlangstringistringrsystibbletidyrtidyselectutf8vctrswithrXMLxml2

NCBI

Rendered fromncbi.Rmdusingknitr::rmarkdownon Feb 11 2025.

Last update: 2023-12-10
Started: 2023-08-23